STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RVR4_PETMATATA element modulatory factor 1. (1079 aa)    
Predicted Functional Partners:
S4RIU7_PETMA
RAB36, member RAS oncogene family.
    
 0.838
S4RW49_PETMA
GRIP and coiled-coil domain containing 1.
     
 0.737
S4RXQ5_PETMA
Uncharacterized protein.
   
 0.703
S4RLY6_PETMA
VPS54 subunit of GARP complex.
   
 
 0.691
S4RIC5_PETMA
VPS51 subunit of GARP complex.
     
 0.682
S4RGB3_PETMA
Component of oligomeric golgi complex 4.
     
 0.680
S4RGV6_PETMA
Component of oligomeric golgi complex 7.
     
 0.680
S4RNP7_PETMA
Uncharacterized protein.
     
 0.679
S4RGI5_PETMA
Component of oligomeric golgi complex 2.
     
 0.665
S4RBM3_PETMA
ADP-ribosylation factor-like 13b.
     
 0.659
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.