STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RW50_PETMAC1q domain-containing protein. (259 aa)    
Predicted Functional Partners:
S4RCW5_PETMA
Uncharacterized protein.
   
 0.844
S4RK02_PETMA
Uncharacterized protein.
    
 0.834
S4RLW1_PETMA
Ig-like domain-containing protein.
    
 0.834
S4R6W7_PETMA
C1q domain-containing protein.
  
 
0.813
S4S088_PETMA
C1q domain-containing protein.
   
 
0.799
S4S090_PETMA
C1q domain-containing protein.
   
 
0.799
S4S091_PETMA
C1q domain-containing protein.
   
 
0.799
S4S092_PETMA
C1q domain-containing protein.
   
 
0.799
S4RWP2_PETMA
C-type lectin domain-containing protein.
  
 
  0.651
S4RFV4_PETMA
Uncharacterized protein.
     
 0.591
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.