STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RWK6_PETMAUncharacterized protein. (399 aa)    
Predicted Functional Partners:
S4RSA6_PETMA
Uncharacterized protein.
   
 0.816
DDX58
DExD/H-box helicase 58.
    
 0.792
S4RT88_PETMA
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.762
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.749
UBB
Ubiquitin B.
    
 0.730
PPL
Periplakin.
    
 0.644
S4RQA2_PETMA
Ion_trans domain-containing protein.
    
  0.642
DDX41
DEAD-box helicase 41.
    
 0.608
S4RMW1_PETMA
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide b; Belongs to the 14-3-3 family.
    
  0.603
S4RN92_PETMA
14_3_3 domain-containing protein; Belongs to the 14-3-3 family.
    
 0.603
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.