STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RWX1_PETMASET domain and mariner transposase fusion gene. (298 aa)    
Predicted Functional Partners:
S4RCC2_PETMA
Chromo domain-containing protein.
    
 0.929
S4RFP0_PETMA
SET domain-containing protein.
    
 0.914
S4R967_PETMA
SET domain bifurcated histone lysine methyltransferase 1b.
    
0.892
S4S051_PETMA
SET domain-containing protein.
   
 0.879
S4RKN7_PETMA
PR domain containing 5.
   
 0.874
S4R4T2_PETMA
WW domain-containing protein.
    
 0.869
S4RFG3_PETMA
PR domain containing 4.
   
 0.858
S4RI70_PETMA
Uncharacterized protein.
    
0.857
S4RP58_PETMA
SET and MYND domain containing 3.
     
 0.856
S4RMW4_PETMA
BAH domain-containing protein.
 
   
 0.853
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.