STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
S4RYF7_PETMA2-amino-3-carboxymuconate-6-semialdehyde decarboxylase; Converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). Belongs to the metallo-dependent hydrolases superfamily. (336 aa)    
Predicted Functional Partners:
S4RI99_PETMA
3-hydroxyanthranilate 3,4-dioxygenase.
  
 
 0.958
S4R5Z6_PETMA
SUMO peptidase family member, NEDD8 specific.
    
 0.915
S4R5F2_PETMA
Aldehyde dehydrogenase 8 family, member A1; Belongs to the aldehyde dehydrogenase family.
 
 
 0.900
S4RYJ6_PETMA
Sorbitol dehydrogenase.
  
 
  0.876
S4RKF8_PETMA
Phosphatidylinositol glycan anchor biosynthesis, class L.
    
  0.829
S4R7R3_PETMA
Potassium voltage-gated channel, shaker-related subfamily, beta member 1 a.
  
 
  0.821
KCNAB3
Potassium voltage-gated channel subfamily A regulatory beta subunit 3.
  
 
  0.821
S4RBR6_PETMA
Aldedh domain-containing protein.
  
 
 0.811
S4RHA8_PETMA
Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.
 
 
 0.811
S4RA94_PETMA
Glyoxalase 1.
    
 0.805
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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