STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RYM3_PETMAJumonji domain containing 4. (407 aa)    
Predicted Functional Partners:
S4RP18_PETMA
Eukaryotic translation termination factor 1a.
    
 
 0.593
S4RGI1_PETMA
AlkB homolog 1, histone H2A dioxygenase.
   
  
 0.494
S4RVE0_PETMA
AlkB homolog 5, RNA demethylase.
   
  
 0.480
S4RGJ5_PETMA
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.476
S4RAN4_PETMA
Lysine (K)-specific demethylase 8.
      
 0.475
S4RBD8_PETMA
2-oxoglutarate and iron-dependent oxygenase domain containing 1.
      
 0.467
S4RCP7_PETMA
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
  
 0.450
ALKBH6
AlkB homolog 6.
      
 0.436
S4RTH5_PETMA
AlkB homolog 7.
   
  
 0.431
S4RIP0_PETMA
AlkB homolog 8, tRNA methyltransferase.
   
  
 0.423
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.