STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RYM4_PETMAFYVE and coiled-coil domain containing 1b. (1473 aa)    
Predicted Functional Partners:
S4RK97_PETMA
Microtubule-associated protein 1 light chain 3 alpha.
   
 
 0.923
ARMC5
Armadillo repeat containing 5.
     
 0.761
S4RZF2_PETMA
RAB4B, member RAS oncogene family.
    
 0.702
S4R625_PETMA
Uncharacterized protein.
   
 
 0.696
S4RKD6_PETMA
Microtubule-associated protein 1 light chain 3 alpha.
   
 
 0.696
S4RKG0_PETMA
Mitochondrial calcium uptake 1.
   
 0.633
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
     
 0.594
S4R9V8_PETMA
ZRAB1B, member RAS oncogene family a.
     
 0.583
S4RDV9_PETMA
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.571
MCU
Mitochondrial calcium uniporter.
     
 0.570
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.