STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RZE4_PETMATransmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (636 aa)    
Predicted Functional Partners:
SEC24C
SEC24 homolog C, COPII coat complex component.
   
    0.596
S4R5T0_PETMA
Pleiomorphic adenoma gene X.
   
 
 0.542
S4RPT3_PETMA
Coiled-coil domain containing 115.
    
   0.493
S4RSY3_PETMA
Phospholipid phosphatase 5.
    
   0.493
S4RC13_PETMA
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
 
      0.481
S4RZR8_PETMA
Uncharacterized protein.
      
 0.477
S4R7T1_PETMA
Uncharacterized protein.
   
    0.474
S4RGY8_PETMA
Serine palmitoyltransferase, long chain base subunit 1.
   
  
 0.418
LMAN2L
Lectin, mannose-binding 2-like b.
   
 
 0.407
S4RPE0_PETMA
L-type lectin-like domain-containing protein.
   
 
 0.407
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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