STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RZZ9_PETMAIF rod domain-containing protein; Belongs to the intermediate filament family. (430 aa)    
Predicted Functional Partners:
S4RRT1_PETMA
Wu:fk65c09; Belongs to the intermediate filament family.
  
0.627
S4RI41_PETMA
Kertain 95; Belongs to the intermediate filament family.
  
0.620
S4RFE7_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.610
S4RBT0_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.599
S4RF29_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
 
0.585
S4R5F3_PETMA
RunxI domain-containing protein.
    
  0.571
S4R4N4_PETMA
Heat shock protein 90 alpha family class A member 1.
    
 0.564
S4R5N6_PETMA
TSC complex subunit 1b.
    
 0.564
S4RDV2_PETMA
Heat shock protein 90 alpha family class A member 1.
    
 0.564
S4RYZ9_PETMA
IF rod domain-containing protein; Belongs to the intermediate filament family.
  
0.564
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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