STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9V4E0Uncharacterized protein. (803 aa)    
Predicted Functional Partners:
A0A0D9WB97
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
  
 0.983
A0A0D9WCQ2
Helicase ATP-binding domain-containing protein.
   
 0.980
A0A0D9VBM7
Uncharacterized protein.
    
 0.979
A0A0D9W6Z7
General transcription factor IIH subunit.
    
 0.979
A0A0D9VYR0
CYCLIN domain-containing protein; Belongs to the cyclin family.
    
 0.978
A0A0D9V6A4
Uncharacterized protein.
    
 0.972
A0A0D9WG57
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.971
A0A0D9VQY2
Uncharacterized protein.
   
 0.966
A0A0D9VBC7
RPOL4c domain-containing protein.
    
 0.965
A0A0D9WEP4
Uncharacterized protein.
    
 0.960
Your Current Organism:
Leersia perrieri
NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert
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