STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0D9WKQ8RING-type E3 ubiquitin transferase. (603 aa)    
Predicted Functional Partners:
A0A0D9X4X1
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
    
 
 0.529
A0A0D9XMQ7
Methyltransferase.
  
 
   0.508
A0A0D9WBL3
Methyltransferase.
  
 
   0.483
A0A0D9XPV5
Uncharacterized protein.
  
 
   0.483
A0A0D9XXF9
Uncharacterized protein.
  
 
   0.473
A0A0D9XTD1
Protein kinase domain-containing protein.
    
 
 0.451
A0A0D9WNJ3
TCP domain-containing protein.
  
 
   0.450
A0A0D9VIK6
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.447
A0A0D9VDR7
Uncharacterized protein.
  
     0.429
A0A0D9W781
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.429
Your Current Organism:
Leersia perrieri
NCBI taxonomy Id: 77586
Other names: L. perrieri, Leersia perrieri (A.Camus) Launert
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