STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_0811Nitrogen fixation nifHD region glnB 1. (108 aa)    
Predicted Functional Partners:
BISU_0394
Ammonium ion transport protein.
 
 0.972
BISU_0396
protein-PII uridylyltransferase.
 
 
 0.920
BISU_0810
Nitrogen regulatory protein P-II family.
 
    
0.815
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.762
BISU_0991
Helicase.
    
   0.700
BISU_1558
Hypothetical protein.
    
   0.700
BISU_1644
Tetratricopeptide repeat protein.
    
   0.700
BISU_0946
Glutamate synthase.
  
  
 0.645
BISU_0812
Amidinotransferase.
       0.566
BISU_0813
Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family.
  
    0.486
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.