STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_0813Transcriptional regulator, LysR family protein; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
BISU_0812
Amidinotransferase.
       0.648
BISU_1737
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.616
BISU_0814
Nitrate/sulfonate/bicarbonate ABC transporter ATPase.
       0.576
BISU_0815
ABC transporter permease.
       0.544
BISU_0810
Nitrogen regulatory protein P-II family.
  
    0.486
BISU_0811
Nitrogen fixation nifHD region glnB 1.
  
    0.486
BISU_0816
Aliphatic sulfonate ABC transporter substrate-binding protein.
       0.458
BISU_1283
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.457
BISU_0946
Glutamate synthase.
     
 0.422
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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