STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1087Cation transport ATPase. (696 aa)    
Predicted Functional Partners:
BISU_1088
MerTP family mercury (Hg2) permease, binding protein MerP.
 
   0.952
BISU_1889
MerTP family mercury (Hg2) permease, binding protein MerP.
 
   0.882
BISU_1089
DNA-binding ferritin-like protein (Oxidative damage protectant).
 
    0.795
BISU_1090
CRP/FNR family transcriptional regulator, anaerobic regulatory protein.
 
     0.775
BISU_1888
DNA-binding protein.
 
    0.559
BISU_1887
Crp/Fnr family transcriptional regulator.
 
     0.525
BISU_1086
Transporter, probably Formate efflux permease.
  
    0.430
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.