STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1106Phosphatidylinositol kinase. (207 aa)    
Predicted Functional Partners:
BISU_1107
Hypothetical protein.
       0.773
BISU_0960
Transcriptional regulator.
   
 
 0.759
BISU_1251
Helix-turn-helix domain-containing protein.
  
   0.587
BISU_0426
Transcriptional regulator.
  
   0.577
BISU_0558
Helix-turn-helix domain-containing protein.
  
   0.577
BISU_1612
XRE family transcriptional regulator.
  
   0.577
BISU_1774
Hypothetical protein.
  
   0.577
BISU_2239
DNA binding protein.
  
   0.577
BISU_1108
ATP-dependent helicase.
       0.484
BISU_1109
Transporter, major facilitator family protein.
       0.424
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.