STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1179ABC transporter substrate-binding protein. (309 aa)    
Predicted Functional Partners:
BISU_1177
Permease protein of ABC transporter system.
 
   0.891
BISU_1176
ABC transporter ATP-binding protein.
 
  0.857
BISU_0682
Polar amino acid ABC transporter inner membrane protein.
 
   0.724
BISU_0243
ABC transporter permease.
 
   0.607
BISU_0843
Polar amino acid ABC transporter inner membrane subunit.
 
   0.599
BISU_0799
Polar amino acid ABC transporter inner membrane subunit.
 
   0.586
BISU_0683
Glutamine transport ATP-binding protein GlnQ.
 
  0.580
BISU_0019
Polar amino acid ABC transporter inner membrane subunit.
 
   0.579
BISU_0580
Amino acid ABC transporter permease.
 
   0.522
BISU_0798
Amino acid ABC transporter permease YckA1.
 
   0.521
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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