STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1228Basic membrane lipoprotein. (341 aa)    
Predicted Functional Partners:
BISU_1231
ABC transporter.
 
 
 0.991
BISU_1229
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
BISU_1230
ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.983
BISU_1227
Cysteine hydrolase.
 
     0.851
BISU_0181
D-ribose transporter ATP binding protein.
 
  
  0.834
BISU_1226
Nicotinamidase-like amidase protein.
 
     0.687
BISU_1232
GntR family transcriptional regulator.
 
     0.533
BISU_1233
Putative glutamyl-tRNA(Gln) amidotransferase.
       0.423
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.408
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
Server load: high (86%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.