STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1658ABC transporter permease. (287 aa)    
Predicted Functional Partners:
BISU_1659
ABC transporter permease.
 
 
  0.997
BISU_1657
Spermidine/putrescine ABC transporter ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.996
BISU_1660
ABC transporter substrate-binding protein.
 
 
  0.993
BISU_1656
Metallophosphatase.
       0.660
BISU_1661
Amino acid permease.
 
     0.584
BISU_1655
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
     0.548
BISU_0040
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
    
 0.537
BISU_1662
Phosphotransferase.
 
     0.508
BISU_0900
Cobalt ABC transporter ATPase.
   
    0.457
cmk
Cytidylate kinase; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
   
    0.437
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.