STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_1704Putative metal-dependent hydrolase. (243 aa)    
Predicted Functional Partners:
BISU_1110
Aspartate ammonia-lyase.
   
 
  0.751
BISU_1703
Putative Amidase.
       0.734
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.479
BISU_1196
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
    0.473
BISU_2117
Binding-protein-dependent transport system inner membrane protein.
  
     0.457
BISU_0923
Putative cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
  0.453
BISU_1705
GntR family transcriptional regulator.
       0.448
BISU_1163
EmrB/QacA subfamily drug resistance transporter; Belongs to the major facilitator superfamily.
  
    0.439
BISU_0140
Major facilitator superfamily permease.
   
    0.432
BISU_1469
Drug resistance MFS transporter, drug:H antiporter-2 family; Belongs to the major facilitator superfamily.
   
    0.432
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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