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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BISU_20034-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)    
Predicted Functional Partners:
BISU_1378
Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 0.800
BISU_0946
Glutamate synthase.
     
 0.772
BISU_0017
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.742
BISU_0906
N-carbamoyl-D-amino acid hydrolase.
 
 
  0.661
BISU_1209
Succinate-semialdehyde dehdyrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.652
BISU_1813
Glutamate decarboxylase.
  
 0.564
BISU_2002
Short-chain dehydrogenase/reductase SDR.
    
  0.538
BISU_2005
Aminotransferase class III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.505
BISU_0483
NAD-dependent methanol dehydrogenase (medh).
  
 
  0.438
BISU_0484
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 
0.438
Your Current Organism:
Bifidobacterium subtile
NCBI taxonomy Id: 77635
Other names: AS 1.2267, ATCC 27537, B. subtile, BCRC 14660, CCRC 14660, CCRC:14660, CCUG 34980, DSM 20096, JCM 5822, LMG 11597, LMG:11597
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