STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000001398Small RNA binding exonuclease protection factor La. (411 aa)    
Predicted Functional Partners:
ENSEBUP00000018121
Zinc finger CCCH-type containing 15.
   
    0.818
ENSEBUP00000013412
annotation not available
   
    0.786
ENSEBUP00000024487
Small nuclear ribonucleoprotein D3 polypeptide.
   
   0.786
ENSEBUP00000018608
annotation not available
   
  
 0.781
ENSEBUP00000002850
Small nuclear ribonucleoprotein D2 polypeptide.
   
 
 0.767
ENSEBUP00000016807
NOP58 ribonucleoprotein homolog (yeast).
   
   0.752
RALYL-2
RALY RNA binding protein like.
   
 
 0.745
ENSEBUP00000026251
Nucleolin.
   
 
 0.687
ENSEBUP00000018824
Interleukin enhancer binding factor 2.
   
  
 0.670
ENSEBUP00000014515
DnaJ (Hsp40) homolog, subfamily C, member 2.
   
    0.665
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.