STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000010466Programmed cell death 6. (164 aa)    
Predicted Functional Partners:
ENSEBUP00000023487
SEC31 homolog B, COPII coat complex component.
    
 0.990
ENSEBUP00000011013
Cullin 3a.
    
 0.924
ENSEBUP00000011996
Sec23 homolog A, coat complex II component.
    
 0.900
ENSEBUP00000010173
Ectodermal-neural cortex 2.
    
 0.898
ENSEBUP00000006966
Kelch-like family member 2.
    
 0.897
KLHL12
Kelch like family member 12.
    
 0.897
ENSEBUP00000018788
Secretion associated, Ras related GTPase 1B.
    
 0.891
ENSEBUP00000003025
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.881
ENSEBUP00000012250
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.881
ENSEBUP00000006023
Cullin 1b.
    
 0.879
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.