STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000012027Transformer 2 beta homolog. (172 aa)    
Predicted Functional Partners:
ENSEBUP00000015209
annotation not available
   
 0.913
SRSF12
Serine and arginine rich splicing factor 12.
  
0.868
ENSEBUP00000026424
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.858
ENSEBUP00000007514
Serine and arginine rich splicing factor 7a.
   
 0.833
ENSEBUP00000019242
annotation not available
   
 0.833
ENSEBUP00000002419
annotation not available
  
 0.813
ENSEBUP00000003642
annotation not available
  
0.810
HNRNPA0
Heterogeneous nuclear ribonucleoprotein A0.
  
 0.803
ENSEBUP00000013851
annotation not available
  
0.802
HNRNPA0-2
Heterogeneous nuclear ribonucleoprotein A0.
  
 0.801
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.