ENSEBUP00000013181 protein (Eptatretus burgeri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSEBUP00000013181

annotation not available (201 aa)

Predicted Functional Partners:

ENSEBUP00000005228

0.920

ENSEBUP00000004222

0.919

ENSEBUP00000001288

0.785

ENSEBUP00000013606

0.775

ENSEBUP00000002211

0.753

ENSEBUP00000019607

0.741

ENSEBUP00000022507

0.740

RALYL-2

0.715

ENSEBUP00000002419

0.681

RALYL

0.681

Your Current Organism:

Eptatretus burgeri

NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEBUP00000001288	ENSEBUP00000002211	ENSEBUP00000001288	ENSEBUP00000002211	Heterogeneous nuclear ribonucleoprotein K.	Polypyrimidine tract binding protein 1a.	0.833
ENSEBUP00000001288	ENSEBUP00000002419	ENSEBUP00000001288	ENSEBUP00000002419	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.808
ENSEBUP00000001288	ENSEBUP00000004222	ENSEBUP00000001288	ENSEBUP00000004222	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.785
ENSEBUP00000001288	ENSEBUP00000005228	ENSEBUP00000001288	ENSEBUP00000005228	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.785
ENSEBUP00000001288	ENSEBUP00000013181	ENSEBUP00000001288	ENSEBUP00000013181	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.785
ENSEBUP00000001288	ENSEBUP00000013606	ENSEBUP00000001288	ENSEBUP00000013606	Heterogeneous nuclear ribonucleoprotein K.	Ubiquitin-conjugating enzyme E2Ia.	0.693
ENSEBUP00000001288	ENSEBUP00000019607	ENSEBUP00000001288	ENSEBUP00000019607	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.944
ENSEBUP00000001288	ENSEBUP00000022507	ENSEBUP00000001288	ENSEBUP00000022507	Heterogeneous nuclear ribonucleoprotein K.	annotation not available	0.833
ENSEBUP00000001288	RALYL	ENSEBUP00000001288	ENSEBUP00000009413	Heterogeneous nuclear ribonucleoprotein K.	RALY RNA binding protein like.	0.934
ENSEBUP00000001288	RALYL-2	ENSEBUP00000001288	ENSEBUP00000019916	Heterogeneous nuclear ribonucleoprotein K.	RALY RNA binding protein like.	0.973
ENSEBUP00000002211	ENSEBUP00000001288	ENSEBUP00000002211	ENSEBUP00000001288	Polypyrimidine tract binding protein 1a.	Heterogeneous nuclear ribonucleoprotein K.	0.833
ENSEBUP00000002211	ENSEBUP00000002419	ENSEBUP00000002211	ENSEBUP00000002419	Polypyrimidine tract binding protein 1a.	annotation not available	0.753
ENSEBUP00000002211	ENSEBUP00000004222	ENSEBUP00000002211	ENSEBUP00000004222	Polypyrimidine tract binding protein 1a.	annotation not available	0.790
ENSEBUP00000002211	ENSEBUP00000005228	ENSEBUP00000002211	ENSEBUP00000005228	Polypyrimidine tract binding protein 1a.	annotation not available	0.789
ENSEBUP00000002211	ENSEBUP00000013181	ENSEBUP00000002211	ENSEBUP00000013181	Polypyrimidine tract binding protein 1a.	annotation not available	0.753
ENSEBUP00000002211	ENSEBUP00000019607	ENSEBUP00000002211	ENSEBUP00000019607	Polypyrimidine tract binding protein 1a.	annotation not available	0.678
ENSEBUP00000002211	RALYL	ENSEBUP00000002211	ENSEBUP00000009413	Polypyrimidine tract binding protein 1a.	RALY RNA binding protein like.	0.673
ENSEBUP00000002211	RALYL-2	ENSEBUP00000002211	ENSEBUP00000019916	Polypyrimidine tract binding protein 1a.	RALY RNA binding protein like.	0.762
ENSEBUP00000002419	ENSEBUP00000001288	ENSEBUP00000002419	ENSEBUP00000001288	annotation not available	Heterogeneous nuclear ribonucleoprotein K.	0.808
ENSEBUP00000002419	ENSEBUP00000002211	ENSEBUP00000002419	ENSEBUP00000002211	annotation not available	Polypyrimidine tract binding protein 1a.	0.753