ENSEBUP00000015146 protein (Eptatretus burgeri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSEBUP00000015146

annotation not available (266 aa)

Predicted Functional Partners:

ENSEBUP00000003964

0.718

ENSEBUP00000007623

0.519

ENSEBUP00000023614

0.519

ENSEBUP00000003843

0.500

ENSEBUP00000002829

0.493

ENSEBUP00000012883

0.493

RND2

0.493

ENSEBUP00000024318

0.493

ENSEBUP00000024379

0.493

ENSEBUP00000025926

0.493

Your Current Organism:

Eptatretus burgeri

NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSEBUP00000002829	ENSEBUP00000003843	ENSEBUP00000002829	ENSEBUP00000003843	annotation not available	Ras homolog family member Ga.	0.692
ENSEBUP00000002829	ENSEBUP00000003964	ENSEBUP00000002829	ENSEBUP00000003964	annotation not available	Cell division cycle 42, like.	0.831
ENSEBUP00000002829	ENSEBUP00000007623	ENSEBUP00000002829	ENSEBUP00000007623	annotation not available	annotation not available	0.738
ENSEBUP00000002829	ENSEBUP00000015146	ENSEBUP00000002829	ENSEBUP00000015146	annotation not available	annotation not available	0.493
ENSEBUP00000002829	ENSEBUP00000023614	ENSEBUP00000002829	ENSEBUP00000023614	annotation not available	annotation not available	0.739
ENSEBUP00000002829	ENSEBUP00000024379	ENSEBUP00000002829	ENSEBUP00000024379	annotation not available	Rho family GTPase 3a.	0.570
ENSEBUP00000002829	RND2	ENSEBUP00000002829	ENSEBUP00000019996	annotation not available	Rho family GTPase 2.	0.571
ENSEBUP00000003843	ENSEBUP00000002829	ENSEBUP00000003843	ENSEBUP00000002829	Ras homolog family member Ga.	annotation not available	0.692
ENSEBUP00000003843	ENSEBUP00000003964	ENSEBUP00000003843	ENSEBUP00000003964	Ras homolog family member Ga.	Cell division cycle 42, like.	0.648
ENSEBUP00000003843	ENSEBUP00000007623	ENSEBUP00000003843	ENSEBUP00000007623	Ras homolog family member Ga.	annotation not available	0.713
ENSEBUP00000003843	ENSEBUP00000012883	ENSEBUP00000003843	ENSEBUP00000012883	Ras homolog family member Ga.	annotation not available	0.687
ENSEBUP00000003843	ENSEBUP00000015146	ENSEBUP00000003843	ENSEBUP00000015146	Ras homolog family member Ga.	annotation not available	0.500
ENSEBUP00000003843	ENSEBUP00000023614	ENSEBUP00000003843	ENSEBUP00000023614	Ras homolog family member Ga.	annotation not available	0.714
ENSEBUP00000003843	ENSEBUP00000024318	ENSEBUP00000003843	ENSEBUP00000024318	Ras homolog family member Ga.	annotation not available	0.686
ENSEBUP00000003843	ENSEBUP00000024379	ENSEBUP00000003843	ENSEBUP00000024379	Ras homolog family member Ga.	Rho family GTPase 3a.	0.690
ENSEBUP00000003843	ENSEBUP00000025926	ENSEBUP00000003843	ENSEBUP00000025926	Ras homolog family member Ga.	annotation not available	0.686
ENSEBUP00000003843	RND2	ENSEBUP00000003843	ENSEBUP00000019996	Ras homolog family member Ga.	Rho family GTPase 2.	0.692
ENSEBUP00000003964	ENSEBUP00000002829	ENSEBUP00000003964	ENSEBUP00000002829	Cell division cycle 42, like.	annotation not available	0.831
ENSEBUP00000003964	ENSEBUP00000003843	ENSEBUP00000003964	ENSEBUP00000003843	Cell division cycle 42, like.	Ras homolog family member Ga.	0.648
ENSEBUP00000003964	ENSEBUP00000007623	ENSEBUP00000003964	ENSEBUP00000007623	Cell division cycle 42, like.	annotation not available	0.839