STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000023119Ligase IV, DNA, ATP-dependent. (980 aa)    
Predicted Functional Partners:
ENSEBUP00000024654
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.997
ENSEBUP00000025526
X-ray repair complementing defective repair in Chinese hamster cells 5.
   
 0.997
ENSEBUP00000001243
Proliferating cell nuclear antigen.
   
 0.966
ENSEBUP00000013491
annotation not available
   
 0.963
ENSEBUP00000023243
annotation not available
   
 0.959
ENSEBUP00000012328
annotation not available
   
 0.949
ENSEBUP00000015972
X-ray repair complementing defective repair in Chinese hamster cells 1.
   
 0.949
ENSEBUP00000014448
Excision repair cross-complementation group 4.
   
 0.945
ENSEBUP00000011727
annotation not available
    
 0.943
ENSEBUP00000004598
mutS homolog 6 (E. coli).
   
 0.942
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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