STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000024198Lysine (K)-specific demethylase 1a. (857 aa)    
Predicted Functional Partners:
ENSEBUP00000004049
REST corepressor 3.
    
 0.987
ENSEBUP00000018055
REST corepressor 3.
    
 0.987
ENSEBUP00000027380
annotation not available
    
 0.985
ENSEBUP00000009121
annotation not available
    
 
 0.953
ENSEBUP00000017235
C-terminal binding protein 1.
    
 0.936
ENSEBUP00000010728
Histone deacetylase 8.
   
 0.933
ENSEBUP00000011543
annotation not available
   
 0.933
ENSEBUP00000006279
Histone deacetylase 3.
   
 0.931
ENSEBUP00000009157
annotation not available
    
 0.913
ENSEBUP00000023243
annotation not available
   
 0.913
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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