ENSEBUP00000025324 protein (Eptatretus burgeri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSEBUP00000025324

annotation not available (187 aa)

Predicted Functional Partners:

ENSEBUP00000003292

0.499

ENSEBUP00000017994

0.499

ENSEBUP00000019609

0.499

ENSEBUP00000025164

0.499

ENSEBUP00000004654

0.457

ENSEBUP00000008541

0.457

ENSEBUP00000016771

0.457

Your Current Organism:

Eptatretus burgeri

NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSEBUP00000003292	ENSEBUP00000004654	RAB3A, member RAS oncogene family, b.	annotation not available	0.558
ENSEBUP00000003292	ENSEBUP00000008541	RAB3A, member RAS oncogene family, b.	RAB27A, member RAS oncogene family.	0.552
ENSEBUP00000003292	ENSEBUP00000016771	RAB3A, member RAS oncogene family, b.	annotation not available	0.553
ENSEBUP00000003292	ENSEBUP00000025324	RAB3A, member RAS oncogene family, b.	annotation not available	0.499
ENSEBUP00000004654	ENSEBUP00000003292	annotation not available	RAB3A, member RAS oncogene family, b.	0.558
ENSEBUP00000004654	ENSEBUP00000017994	annotation not available	annotation not available	0.559
ENSEBUP00000004654	ENSEBUP00000019609	annotation not available	annotation not available	0.558
ENSEBUP00000004654	ENSEBUP00000025164	annotation not available	RAB3D, member RAS oncogene family, b.	0.492
ENSEBUP00000004654	ENSEBUP00000025324	annotation not available	annotation not available	0.457
ENSEBUP00000008541	ENSEBUP00000003292	RAB27A, member RAS oncogene family.	RAB3A, member RAS oncogene family, b.	0.552
ENSEBUP00000008541	ENSEBUP00000017994	RAB27A, member RAS oncogene family.	annotation not available	0.555
ENSEBUP00000008541	ENSEBUP00000019609	RAB27A, member RAS oncogene family.	annotation not available	0.553
ENSEBUP00000008541	ENSEBUP00000025164	RAB27A, member RAS oncogene family.	RAB3D, member RAS oncogene family, b.	0.487
ENSEBUP00000008541	ENSEBUP00000025324	RAB27A, member RAS oncogene family.	annotation not available	0.457
ENSEBUP00000016771	ENSEBUP00000003292	annotation not available	RAB3A, member RAS oncogene family, b.	0.553
ENSEBUP00000016771	ENSEBUP00000017994	annotation not available	annotation not available	0.557
ENSEBUP00000016771	ENSEBUP00000019609	annotation not available	annotation not available	0.556
ENSEBUP00000016771	ENSEBUP00000025164	annotation not available	RAB3D, member RAS oncogene family, b.	0.489
ENSEBUP00000016771	ENSEBUP00000025324	annotation not available	annotation not available	0.457
ENSEBUP00000017994	ENSEBUP00000004654	annotation not available	annotation not available	0.559