STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSEBUP00000027778LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (104 aa)    
Predicted Functional Partners:
ENSEBUP00000002850
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.995
ENSEBUP00000027938
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.994
ENSEBUP00000002307
annotation not available
   
 0.993
ENSEBUP00000024487
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.993
ENSEBUP00000007354
annotation not available
   
 0.992
ENSEBUP00000005359
annotation not available
   
 0.991
ENSEBUP00000004487
annotation not available
   
 0.990
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.990
ENSEBUP00000013523
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.990
ENSEBUP00000015945
annotation not available
   
 0.989
Your Current Organism:
Eptatretus burgeri
NCBI taxonomy Id: 7764
Other names: Bdellostoma burgeri, E. burgeri, inshore hagfish
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