STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0010Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: sme:SMa1759 putative GntR-family transcriptional regulator. (239 aa)    
Predicted Functional Partners:
Xaut_0040
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_1929 transcriptional regulator, GntR family.
  
     0.774
Xaut_0485
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_4357 transcriptional regulator, GntR family.
  
     0.768
Xaut_4654
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bja:blr1043 transcriptional regulatory protein.
  
     0.768
Xaut_0520
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mpt:Mpe_A2899 putative GntR-family transcription regulator.
  
     0.767
Xaut_1244
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; Helix-turn-helix type 11 domain protein; KEGG: reh:H16_B1718 transcriptional regulator, GntR-family.
  
     0.766
Xaut_1624
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A1563 transcriptional regulator, GntR-family.
  
  
 0.763
Xaut_3347
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rle:pRL120181 putative GntR family transcriptional regulator.
  
  
 0.742
Xaut_1699
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: mag:amb1553 transcriptional regulator.
  
  
 0.721
Xaut_0011
PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase; KEGG: vei:Veis_1883 iron-containing alcohol dehydrogenase.
 
     0.715
Xaut_4351
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_2929 GntR domain protein.
  
  
 0.704
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.