STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0020PFAM: protein of unknown function DUF218; KEGG: bja:blr1392 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Xaut_0021
PFAM: protein of unknown function DUF214; KEGG: rpd:RPD_0944 protein of unknown function DUF214.
     0.974
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
     0.868
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
    0.736
Xaut_3794
PFAM: Domain of unknown function DUF1849; KEGG: bbt:BBta_4750 putative exported protein of unknown function.
  
     0.686
Xaut_1459
PFAM: DNA polymerase III chi subunit HolC; KEGG: rpa:RPA3059 DNA polymerase III chi subunit.
 
     0.665
Xaut_4381
PFAM: SmpA/OmlA domain protein; KEGG: nha:Nham_1582 SmpA/OmlA.
  
     0.643
Xaut_2559
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: rpa:RPA4367 sensor histidine kinase.
  
     0.609
Xaut_2543
KEGG: rpe:RPE_3347 hypothetical protein.
  
     0.588
thrB
TIGRFAM: homoserine kinase; PFAM: aminoglycoside phosphotransferase; KEGG: rpa:RPA4270 homoserine kinase; Belongs to the pseudomonas-type ThrB family.
  
    0.584
Xaut_1448
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: nha:Nham_0100 DNA polymerase III, delta subunit.
 
     0.562
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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