STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0125KEGG: rpd:RPD_1059 hypothetical protein. (319 aa)    
Predicted Functional Partners:
Xaut_0126
KEGG: bra:BRADO5401 conserved hypothetical protein (TPR repeat).
 
   0.836
Xaut_0097
PFAM: NifQ family protein; KEGG: zmo:ZMO1831 nitrogen fixation protein.
  
 
 0.782
Xaut_1650
KEGG: rpd:RPD_3249 NifU-like protein.
  
 
 0.782
Xaut_1289
PFAM: aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; ferredoxin; [2Fe-2S]-binding domain protein; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: pna:Pnap_2695 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
  
 0.646
Xaut_1404
PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 putative SufE-like protein.
  
 
 0.633
Xaut_0833
KEGG: zmo:ZMO1850 hypothetical protein.
  
     0.622
Xaut_0085
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: bra:BRADO5446 ABC transporter associated with Fe-S cluster assembly, ATP binding protein.
  
  
 0.603
Xaut_4468
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2839 FeS assembly ATPase SufC.
  
  
 0.603
Xaut_0084
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: nwi:Nwi_1664 FeS assembly protein SufB.
  
 
 0.593
Xaut_0086
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: bra:BRADO5445 SufD, needed for FhuF Fe-S center production/stability.
  
 
 0.593
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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