STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0167KEGG: rpd:RPD_3854 respiratory-chain NADH dehydrogenase, subunit 1. (317 aa)    
Predicted Functional Partners:
Xaut_0170
PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: rle:pRL110293 putative formate hydrogenlyase subunit 5 precursor.
 
 
 0.998
Xaut_0171
PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; KEGG: rpe:RPE_0957 NADH ubiquinone oxidoreductase, 20 kDa subunit.
 
 
 0.998
Xaut_0169
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpe:RPE_0955 NADH dehydrogenase (quinone).
 
 
 0.984
Xaut_0166
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rle:pRL110297 putative hydrogenase-4 component B.
 
 
 0.983
Xaut_0168
KEGG: rle:pRL110295 putative hydrogenase-4 component E.
 
  
 0.973
Xaut_0165
SMART: helix-turn-helix domain protein; KEGG: bja:blr6338 hypothetical protein.
 
     0.827
Xaut_1581
PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: noc:Noc_1279 NADH/ubiquinone/plastoquinone (complex I).
 
 
 0.821
nuoI
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
  
 
 0.815
Xaut_0083
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5932 ferredoxin.
  
 
 0.802
Xaut_0112
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bbt:BBta_5903 ferredoxin-like (in nif region).
  
 
 0.802
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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