STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0203PFAM: amine oxidase; KEGG: bja:blr0703 hypothetical protein. (450 aa)    
Predicted Functional Partners:
Xaut_0315
KEGG: rpb:RPB_4481 hypothetical protein.
  
     0.574
Xaut_0204
PFAM: amine oxidase; HI0933 family protein; FAD dependent oxidoreductase; KEGG: bja:blr0703 hypothetical protein.
 
    
0.559
Xaut_1155
PFAM: histone deacetylase superfamily; KEGG: nha:Nham_0780 histone deacetylase superfamily.
   
 0.548
Xaut_2286
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.530
Xaut_3210
KEGG: rpa:RPA3431 hypothetical protein.
  
     0.506
Xaut_4196
KEGG: rpb:RPB_3001 hypothetical protein.
  
     0.506
Xaut_3823
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.501
ispA
PFAM: Polyprenyl synthetase; KEGG: nha:Nham_0623 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
     
 0.478
Xaut_3824
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
     0.472
Xaut_0016
KEGG: bra:BRADO6465 hypothetical protein.
  
     0.470
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.