STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0211PFAM: secretion protein HlyD family protein; KEGG: hch:HCH_01961 membrane-fusion protein. (331 aa)    
Predicted Functional Partners:
Xaut_0209
PFAM: ABC-2 type transporter; KEGG: bbt:BBta_7848 putative ABC transporter (permease protein).
  
 0.962
Xaut_0210
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: dar:Daro_0987 ABC-2:ABC transporter related.
  
 0.957
macB
ABC transporter related; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.803
Xaut_0458
PFAM: ABC-2 type transporter; KEGG: rpb:RPB_3666 ABC-2.
  
 0.737
Xaut_4169
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: nha:Nham_3601 RND efflux system, outer membrane lipoprotein, NodT.
 
 
 0.566
Xaut_4235
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpd:RPD_2577 type I secretion outer membrane protein, TolC.
  
 
 0.544
Xaut_0617
PFAM: outer membrane efflux protein; KEGG: nha:Nham_4530 outer membrane efflux protein.
  
 
 0.503
Xaut_1058
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: bbt:BBta_2739 putative outer membrane efflux protein.
  
 
 0.503
Xaut_2451
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: rpb:RPB_2240 RND efflux system, outer membrane lipoprotein, NodT.
  
 
 0.503
Xaut_3981
PFAM: outer membrane efflux protein; KEGG: bbt:BBta_7266 putative outer membrane cobalt-zinc-cadmium resistance protein CzcC precursor.
  
 
 0.503
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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