STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0230PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: ter:Tery_2058 peptidase C14, caspase catalytic subunit P20. (355 aa)    
Predicted Functional Partners:
Xaut_0231
Hypothetical protein.
       0.717
Xaut_0232
Hypothetical protein.
       0.681
Xaut_0722
PFAM: peptidase C14 caspase catalytic subunit p20; KEGG: ret:RHE_PA00011 putative peptidase protein (caspase-1 like protein).
  
     0.580
Xaut_0773
PFAM: peptidase C14 caspase catalytic subunit p20; SMART: peptidase C14 caspase precursor p45; KEGG: dar:Daro_2549 peptidase C14, caspase catalytic subunit P20.
  
     0.436
Xaut_0785
PFAM: type III restriction protein res subunit; protein of unknown function DUF450; EcoEI R domain protein; SMART: DEAD-like helicases; KEGG: nwi:Nwi_0270 DEAD/DEAH box helicase.
 
     0.403
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.