STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0405KEGG: nwi:Nwi_2807 hypothetical protein. (178 aa)    
Predicted Functional Partners:
Xaut_1161
PFAM: HemY domain protein; KEGG: bja:bll0564 hypothetical protein.
  
     0.724
Xaut_2048
PFAM: import inner membrane translocase subunit Tim44; KEGG: rpe:RPE_0375 import inner membrane translocase, subunit Tim44.
  
     0.699
Xaut_1171
PFAM: protein of unknown function DUF1159; KEGG: rpe:RPE_4435 protein of unknown function DUF1159.
  
     0.643
Xaut_4196
KEGG: rpb:RPB_3001 hypothetical protein.
  
    0.612
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
       0.594
Xaut_3299
TIGRFAM: Double-strand break repair protein AddB; KEGG: bbt:BBta_0089 putative helicase-exonuclease type V protein family, AddB subunit.
  
     0.594
atpF2
H+transporting two-sector ATPase B/B' subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.589
Xaut_0039
PFAM: Heparinase II/III family protein; KEGG: rpd:RPD_0718 heparinase II/III-like.
  
     0.573
Xaut_3487
KEGG: rpc:RPC_4248 hypothetical protein.
  
     0.573
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.537
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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