STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0422PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_4299 TonB-dependent receptor. (744 aa)    
Predicted Functional Partners:
Xaut_4275
TIGRFAM: TonB family protein; KEGG: nwi:Nwi_2038 TonB like protein.
  
 
 0.696
Xaut_2278
TIGRFAM: TonB family protein; KEGG: nha:Nham_0730 TonB-like.
  
 
 0.689
Xaut_3057
Putative TolA; KEGG: rpe:RPE_4708 putative TolA.
  
 
 0.689
Xaut_2778
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: rsh:Rsph17029_3602 putative FecR.
 
  
 0.546
Xaut_4191
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
 
  
 0.536
Xaut_3198
PFAM: iron permease FTR1; KEGG: bvi:Bcep1808_3073 iron permease FTR1.
  
  
 0.529
Xaut_1011
PFAM: AMP-dependent synthetase and ligase; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; KEGG: sen:SACE_4285 AMP-dependent synthetase and ligase.
  
  
 0.509
Xaut_2279
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: nha:Nham_0729 biopolymer transport protein ExbD/TolR.
 
  
 0.493
Xaut_2780
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ypn:YPN_0698 ferrichrome transport ATP-binding protein FhuC.
  
  
 0.492
Xaut_2782
PFAM: periplasmic binding protein; KEGG: csa:Csal_1050 periplasmic binding protein.
  
  
 0.489
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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