STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0432PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsq:Rsph17025_3899 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Xaut_3873
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bpd:BURPS668_1263 oxidoreductase, short chain dehydrogenase/reductase family.
 
     0.753
Xaut_1592
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bte:BTH_I2606 oxidoreductase, short chain dehydrogenase/reductase family superfamily.
  
     0.735
Xaut_0431
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family.
       0.620
Xaut_0430
PFAM: Extracellular ligand-binding receptor; KEGG: vei:Veis_4699 extracellular ligand-binding receptor.
 
 
   0.600
Xaut_0428
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: vei:Veis_4701 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
     0.529
Xaut_0427
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: mlo:mll1034 3-hydroxybutyryl-CoA dehydrogenase.
 
 0.492
Xaut_1294
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bbt:BBta_3264 putative oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.469
Xaut_0426
PFAM: protein of unknown function DUF849; KEGG: mlo:mll1033 hypothetical protein.
 
    0.448
Xaut_0383
Beta-ketoacyl synthase; PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: nfa:nfa30250 putative polyketide synthase.
  
 
 0.414
Xaut_1007
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; KEGG: mxa:MXAN_4526 polyketide synthase type I.
 
 
 0.414
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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