STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0481PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mlo:mll0250 transcription regulator. (284 aa)    
Predicted Functional Partners:
Xaut_1222
TIGRFAM: urea amidolyase related protein; Urea carboxylase; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: rle:pRL90293 putative UreA amidolyase.
  
    0.815
Xaut_0482
PFAM: conserved hypothetical protein; KEGG: har:HEAR0348 conserved hypothetical protein; periplasmic.
 
  
 0.605
Xaut_0480
TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE domain protein; KEGG: reh:H16_B1719 ketopantoate reductase.
       0.503
Xaut_4351
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pde:Pden_2929 GntR domain protein.
 
  
 0.440
Xaut_1496
PFAM: Allophanate hydrolase subunit 1; KEGG: bbt:BBta_4132 putative carboxylase.
  
    0.421
Xaut_0484
PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2797 protein of unknown function DUF112, transmembrane.
 
    0.412
Xaut_1495
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: nha:Nham_2041 allophanate hydrolase subunit 2.
  
    0.400
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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