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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0484PFAM: protein of unknown function DUF112 transmembrane; KEGG: pol:Bpro_2797 protein of unknown function DUF112, transmembrane. (505 aa)    
Predicted Functional Partners:
Xaut_0482
PFAM: conserved hypothetical protein; KEGG: har:HEAR0348 conserved hypothetical protein; periplasmic.
 
  
 0.929
Xaut_0483
KEGG: mpt:Mpe_A2228 hypothetical protein.
 
  
 0.904
Xaut_1330
PFAM: conserved hypothetical protein; KEGG: har:HEAR0415 conserved hypothetical protein; putative exported protein.
 
  
 0.901
Xaut_1331
PFAM: protein of unknown function DUF1468; KEGG: atc:AGR_C_182 hypothetical protein.
 
  
 0.733
Xaut_0301
PFAM: putative ammonia monooxygenase; KEGG: rpb:RPB_0495 putative ammonia monooxygenase.
 
    0.452
Xaut_0485
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: rme:Rmet_4357 transcriptional regulator, GntR family.
       0.436
Xaut_0481
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: mlo:mll0250 transcription regulator.
 
    0.412
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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