STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0527PFAM: domain of unknown function DUF1738; KEGG: nwi:Nwi_0255 antirestriction protein. (242 aa)    
Predicted Functional Partners:
Xaut_3033
KEGG: mes:Meso_3814 domain of unknown function DUF1738.
 
     0.975
Xaut_0795
KEGG: bbt:BBta_7394 putative ArdC antirestriction protein.
 
     0.887
Xaut_0535
PFAM: TRAG family protein; KEGG: atc:AGR_L_58 component of type IV secretion system.
 
    0.706
Xaut_0544
PFAM: Relaxase/mobilization nuclease family protein; KEGG: nha:Nham_0596 hypothetical protein.
 
     0.547
Xaut_0526
Hypothetical protein.
       0.454
Xaut_0528
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mes:Meso_4229 phage integrase-like SAM-like; Belongs to the 'phage' integrase family.
       0.450
Xaut_0529
KEGG: mes:Meso_4230 hypothetical protein.
       0.450
Xaut_0530
KEGG: nar:Saro_3931 phage integrase family protein.
       0.450
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.