STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0569PFAM: helix-turn-helix domain protein; KEGG: bov:BOV_0718 transcriptional regulator, Cro/CI family. (263 aa)    
Predicted Functional Partners:
Xaut_0568
PFAM: GCN5-related N-acetyltransferase; KEGG: bms:BR0725 acetyltransferase, GNAT family.
 
     0.953
Xaut_0567
KEGG: bov:BOV_0716 putative adenylate kinase.
       0.788
Xaut_0558
KEGG: lpc:LPC_0186 hypothetical protein.
 
     0.768
Xaut_0565
Hypothetical protein.
       0.495
Xaut_0566
Hypothetical protein.
       0.495
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.