STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0694KEGG: pde:Pden_1479 hypothetical protein. (95 aa)    
Predicted Functional Partners:
Xaut_0695
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: pde:Pden_1480 conjugal transfer protein TrbJ.
     0.937
Xaut_0691
TIGRFAM: P-type conjugative transfer protein TrbG; PFAM: Conjugal transfer protein TrbG/VirB9/CagX; KEGG: mes:Meso_0501 conjugal transfer protein TrbG/VirB9/CagX.
 
     0.933
Xaut_0693
TIGRFAM: P-type conjugative transfer protein TrbL; PFAM: TrbL/VirB6 plasmid conjugal transfer protein; KEGG: mes:Meso_0503 TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.931
Xaut_0690
PFAM: conjugation TrbI family protein; KEGG: pde:Pden_1475 conjugation TrbI family protein.
 
     0.925
Xaut_0689
KEGG: mes:Meso_0499 hypothetical protein.
 
     0.892
Xaut_0692
PFAM: Conjugal transfer protein; KEGG: mes:Meso_0502 conjugal transfer protein.
 
     0.868
Xaut_2882
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mes:Meso_0505 conjugal transfer protein TrbJ.
     0.763
Xaut_0697
KEGG: mes:Meso_2322 conjugal transfer protein TrbB.
 
     0.760
Xaut_0745
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: mes:Meso_0505 conjugal transfer protein TrbJ.
     0.757
Xaut_3000
TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: bbt:BBta_7745 putative conjugal transfer protein TrbJ.
     0.757
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.