STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0700KEGG: pde:Pden_1505 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Xaut_0702
KEGG: pde:Pden_1507 hypothetical protein.
 
     0.934
Xaut_0701
PFAM: TRAG family protein; KEGG: pde:Pden_1506 TraG family protein.
 
     0.903
Xaut_0697
KEGG: mes:Meso_2322 conjugal transfer protein TrbB.
 
     0.831
Xaut_0588
KEGG: bja:bll0044 hypothetical protein.
 
     0.779
Xaut_0698
PFAM: Conjugal transfer protein TrbC; KEGG: pde:Pden_1483 conjugal transfer protein TrbC.
 
     0.779
Xaut_0752
KEGG: bbt:BBta_7738 hypothetical protein.
 
     0.779
Xaut_2875
KEGG: bbt:BBta_7738 hypothetical protein.
 
     0.779
Xaut_4008
KEGG: bja:bll0044 hypothetical protein.
 
     0.779
Xaut_4016
KEGG: pde:Pden_1513 hypothetical protein.
 
   
 0.724
Xaut_0711
KEGG: mes:Meso_3841 putative transcriptional regulator.
 
   
 0.721
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.