STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0804KEGG: nar:Saro_3930 hypothetical protein. (613 aa)    
Predicted Functional Partners:
Xaut_0802
KEGG: mes:Meso_4141 hypothetical protein.
       0.786
Xaut_0803
KEGG: mes:Meso_4142 hypothetical protein.
       0.780
Xaut_0805
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: mes:Meso_4144 phage integrase-like SAM-like; Belongs to the 'phage' integrase family.
       0.780
Xaut_0801
PFAM: domain of unknown function DUF1738; KEGG: mes:Meso_4138 domain of unknown function DUF1738.
       0.437
Xaut_0806
PFAM: domain of unknown function DUF1738; KEGG: pde:Pden_1544 domain of unknown function DUF1738.
       0.420
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.