STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0876TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; KEGG: sal:Sala_2539 arsenate reductase. (145 aa)    
Predicted Functional Partners:
Xaut_0878
TIGRFAM: Arsenate resistance ArsH; PFAM: NADPH-dependent FMN reductase; KEGG: nwi:Nwi_3127 NADPH-dependent FMN reductase.
  
 0.967
Xaut_0875
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mes:Meso_0325 protein tyrosine phosphatase.
 
  
 0.965
Xaut_0874
PFAM: regulatory protein ArsR; KEGG: pde:Pden_3342 regulatory protein, ArsR.
   
 0.885
Xaut_0877
TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: nwi:Nwi_3126 arsenite efflux pump ACR3.
    
 0.777
Xaut_3958
PFAM: low molecular weight phosphotyrosine protein phosphatase; SMART: regulatory protein ArsR; KEGG: nha:Nham_4431 transcriptional regulator, ArsR family.
 
  
 0.707
Xaut_0873
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: atc:AGR_L_3301 hypothetical protein.
       0.477
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.419
Xaut_0872
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; KEGG: gbe:GbCGDNIH1_0077 transcriptional regulator, AraC family.
       0.407
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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