STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0883KEGG: aba:Acid345_0414 putative acyl carrier protein. (85 aa)    
Predicted Functional Partners:
Xaut_1011
PFAM: AMP-dependent synthetase and ligase; Thioesterase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; KEGG: sen:SACE_4285 AMP-dependent synthetase and ligase.
  
 
 0.961
Xaut_0884
FkbH like protein; TIGRFAM: HAD-superfamily phosphatase, subfamily IIIC; FkbH like protein; KEGG: aba:Acid345_0415 HAD-superfamily phosphatase subfamily IIIC.
 
   
 0.910
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
     
 0.907
Xaut_0885
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: ade:Adeh_2783 membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
 
 
 0.888
Xaut_2786
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; KEGG: pmy:Pmen_2870 amino acid adenylation domain.
  
 
 0.880
nuoC
NADH (or F420H2) dehydrogenase, subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
   
 0.822
Xaut_3116
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rpb:RPB_2466 malonyl CoA-acyl carrier protein transacylase.
  
 0.815
Xaut_2785
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: reh:H16_B1685 non-ribosomal peptide synthetase.
  
 
 0.808
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
  
 
 0.806
Xaut_0147
PFAM: Rhodanese domain protein; Ankyrin; KEGG: bbt:BBta_2170 putative thiosulfate sulfurtransferase.
   
 0.784
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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