STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0911PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reu:Reut_B3915 NAD-dependent epimerase/dehydratase:short-chain dehydrogenase/reductase SDR. (256 aa)    
Predicted Functional Partners:
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
 
 
 0.980
Xaut_0910
PFAM: regulatory protein MarR; KEGG: pna:Pnap_2122 transcriptional regulator, MarR family.
 
     0.843
Xaut_0913
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rpd:RPD_1543 acyl-CoA dehydrogenase-like.
 
  0.786
Xaut_0914
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_4107 AMP-dependent synthetase and ligase.
   0.746
Xaut_1136
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: ppu:PP_3163 benzoate dioxygenase, ferredoxin reductase component.
 
 0.650
Xaut_2006
PFAM: AMP-dependent synthetase and ligase; KEGG: rpc:RPC_1049 AMP-dependent synthetase and ligase.
 
   0.595
Xaut_4298
PFAM: O-methyltransferase family 3; KEGG: mlo:mlr0279 O-methyltransferase.
  
 
 0.515
Xaut_0915
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase NAD-binding; KEGG: pde:Pden_0201 3-hydroxyacyl-CoA dehydrogenase, NAD-binding.
  
 0.477
Xaut_4075
PFAM: AMP-dependent synthetase and ligase; KEGG: bxe:Bxe_C1028 putative AMP-dependent synthetase and ligase.
 
   0.442
Xaut_3116
TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: rpb:RPB_2466 malonyl CoA-acyl carrier protein transacylase.
 
 
 0.426
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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