STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xaut_0922PFAM: amino acid permease-associated region; KEGG: mlo:mll7301 amino acid transporter. (571 aa)    
Predicted Functional Partners:
Xaut_0923
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: gbe:GbCGDNIH1_1826 aminomethyltransferase; Belongs to the GcvT family.
 
  
 0.828
Xaut_2310
TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: xcb:XC_0142 trehalose synthase.
  
 0.804
Xaut_3182
KEGG: gbe:GbCGDNIH1_1827 hypothetical protein.
 
     0.698
Xaut_3184
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: sme:SMc04148 putative aminomethyltransferase protein; Belongs to the GcvT family.
 
  
 0.644
Xaut_3180
KEGG: gbe:GbCGDNIH1_1829 hypothetical cytosolic protein.
  
     0.632
Xaut_0919
PFAM: leucine rich repeat variant; KEGG: dge:Dgeo_0869 leucine rich repeat variant.
 
     0.544
Xaut_0921
PFAM: Electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha subunit; KEGG: nph:NP3168A electron transfer flavoprotein, alpha subunit.
   
   0.510
Xaut_1010
PFAM: condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: mva:Mvan_1003 beta-ketoacyl synthase.
  
 
 0.489
Xaut_0917
PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: nca:Noca_0618 NADH:flavin oxidoreductase/NADH oxidase.
 
   
 0.483
Xaut_0918
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: hma:rrnAC2605 heterodisulfide reductase.
       0.478
Your Current Organism:
Xanthobacter autotrophicus
NCBI taxonomy Id: 78245
Other names: X. autotrophicus Py2, Xanthobacter autotrophicus Py2, Xanthobacter autotrophicus str. Py2, Xanthobacter autotrophicus strain Py2, Xanthobacter sp. Py2
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